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Question: HDFStore output in dataframe not series


0

I would like to have the two tables that I read in, stored in data frames.

I'm reading a h5 file into my code with:

with pd.HDFStore(directory_path) as store:
    self.df = store['/raw_ti4404']
    self.hr_df = store['/metric_heartrate']

self.df is being stored as a data frame, but self.hr_df is being stored as a series.

I am calling them both in the same manner and I don't understand why the one is a data frame and the other a series. It might be something to do with how the data is stored:

enter image description here

Any help on how to store the metric_heartrate as a data frame would be appreciated.

Question author Annemie-27 | Source

Answer


1


Most probably the metric_heartrate was stored as Series.

Demo:

Generate sample DF:

In [123]: df = pd.DataFrame(np.random.rand(10, 3), columns=list('abc'))

In [124]: df
Out[124]:
          a         b         c
0  0.404338  0.010642  0.686192
1  0.108319  0.962482  0.772487
2  0.564785  0.456916  0.496818
3  0.122507  0.653329  0.647296
4  0.348033  0.925427  0.937080
5  0.750008  0.301208  0.779692
6  0.833262  0.448925  0.553434
7  0.055830  0.267205  0.851582
8  0.189788  0.087814  0.902296
9  0.045610  0.738983  0.831780

In [125]: store = pd.HDFStore('d:/temp/test.h5')

Let's store a column as Series:

In [126]: store.append('ser', df['a'], format='t')

Let's store a DataFrame, containing only one column - a:

In [127]: store.append('df', df[['a']], format='t')

Reading data from HDFStore:

In [128]: store.select('ser')
Out[128]:
0    0.404338
1    0.108319
2    0.564785
3    0.122507
4    0.348033
5    0.750008
6    0.833262
7    0.055830
8    0.189788
9    0.045610
Name: a, dtype: float64

In [129]: store.select('df')
Out[129]:
          a
0  0.404338
1  0.108319
2  0.564785
3  0.122507
4  0.348033
5  0.750008
6  0.833262
7  0.055830
8  0.189788
9  0.045610

Fix - read Series and convert it to DF:

In [130]: store.select('ser').to_frame('a')
Out[130]:
          a
0  0.404338
1  0.108319
2  0.564785
3  0.122507
4  0.348033
5  0.750008
6  0.833262
7  0.055830
8  0.189788
9  0.045610
Answer author Maxu

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